Importing MAGE-ML format microarray data into BioConductor
نویسندگان
چکیده
منابع مشابه
Importing MAGE-ML format microarray data into BioConductor
UNLABELLED The microarray gene expression markup language (MAGE-ML) is a widely used XML (eXtensible Markup Language) standard for describing and exchanging information about microarray experiments. It can describe microarray designs, microarray experiment designs, gene expression data and data analysis results. We describe RMAGEML, a new Bioconductor package that provides a link between cDNA m...
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SUMMARY ArrayExpress is one of the largest public repositories of microarray datasets. R/Bioconductor provides a comprehensive suite of microarray analysis and integrative bioinformatics software. However, easy ways for importing datasets from ArrayExpress into R/Bioconductor have been lacking. Here, we present such a tool that is suitable for both interactive and automated use. AVAILABILITY ...
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A 'MageBuilder' object takes a set of 'MageMap' objects and a set of data streams as input, and produces a MAGEstk object representation, which is then serialized as MAGE-ML. A 'MageMap' object encapsulates the rules of how data records from an input stream relate to one MAGE object. Each input "stream" is an anonymous subroutine that supplies records whose fields represent columns in the input...
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ژورنال
عنوان ژورنال: Bioinformatics
سال: 2004
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/bth396